visualize

Visualization toolbox. Provides modules for efficiently visualizing cell morphologies, ion currents, voltage traces, rasterplots, histograms, and PSTHs.

Functions

svg2emf(filename, path_to_inkscape)

Converts svg to emf, which can be imported in Word using inkscape.

plot_hoc(hoc_file, **kwargs)

Plot a hoc file using matplotlib.

Modules

cell_morphology_visualizer

Plot out the cell morphology and its activity during a simulation.

cell_to_ipython_animation

Display animations in IPython sessions.

current_visualizer

Visulize all transmembrane ionic currents of a cell simulation.

dendrogram

Plot a dendrogram of a neuron morphology.

histogram

Plot line histograms

manylines

Make lineplots in parallel

rasterplot

Efficiently create rasterplots from spike time dataframes.

utils

Visualization utilities.

voltage_trace_visualizer

Visualize voltage traces from the results of a Simulator object.

vtk

Save simulation data in vtk compatible formats