simrun¶

Run simulations of network-embedded neuron models.

This package provides a framework to run simulations of network-embedded neuron models. They allow to run new simulations from existing parameter files, or to re-run existing simulations with adapted parameters for the cell and/or network.

Modules¶

`modular_reduced_model_inference`	Create reduced models from synapse activation data.
`PSP_with_cell_modification`	Calculate PSPs depending on cell modifications.
`generate_synapse_activations`	Generate synapse activation files.
`get_cell_with_network`	Build a cell with realized synapses from a Cell parameters file and a Network parameters file.
`parameters_to_cell`	Rebuild and re-simulate a network-embedded cell from .param files.
`rerun_db`	Recreate and resimulate network-embedded neuron simulation from a simrun-initialized database.
`robust_dask_delayed_execution`	Robustly execute all `dask.delayed` objects in a `ManagedFolder`
`run_existing_synapse_activations`	ongoing activity L2 neuron model
`run_new_simulations`	Create and simulate network-embedded neuron models.
`seed_manager`	Get a random seed
`sim_trial_to_cell_object`	Recreate and resimulate a single simulation trial from parameter files and return the cell object.
`synaptic_strength_fitting`	Calculate the cell type specific synaptic strengths of synapses based on the neuron model and network parameters.
`utils`	Utility and convenience functions for the `simrun` package.