data_base ❭ analyze

analyze

Analyze simrun-initialized databases.

This module provides methods for binning and aggregating synapse activations, spike times, and voltage traces, as well as convenience methods to analyze the results of simrun.reduced_model.

See also

data_base.db_initializers.load_simrun_general for initializing databases from simrun results.

Functions

split_synapse_activation(sa, selfcheck, excitatory, inhibitory)

Augment a Synapse activation dataframe with a boolean column for excitatory/inhibitory.

Modules

spatiotemporal_binning

Bin Presynaptic spike times or Synapse activation dataframes by time and space.

spike_detection

Detect spikes from Voltage traces dataframes.

temporal_binning

Bin Presynaptic spike times and Synapse activation dataframes by time.

voltage_binning

Calculate the voltage as a density array.