simrun ❭ rerun_db

rerun_db

Recreate and resimulate network-embedded neuron simulation from a simrun-initialized database.

This module provides a function to resimulate a network-embedded neuron simulation from a simrun-initialized database. It allows to modify either the cell or the network with modification functions. The database is expected to have been initialized with data_base.db_initializers.load_simrun_general. The function rerun_db() takes a database and a directory as input and resimulates the network-embedded neuron simulation for each simulation trial in the database. The results are stored in the specified directory.

See also

load_simrun_general for initializing a database from raw simrun output.

See also

cell_modify_functions and network_modify_functions for example functions to modify the Cell parameters and Network parameters.

Classes

Opaque

Wrapper class to make objects opaqye to dask

Functions

rerun_db(db, outdir, tStop, neuron_param_modify_functions, network_param_modify_functions, synapse_activation_modify_functions, stis, silent, additional_network_params, child_process)

Recreate and resimulate a network-embedded neuron simulation from a simrun-initialized database.