spike_analysis ❭ core ❭ ReaderSmr

ReaderSmr¶

class spike_analysis.core.ReaderSmr(path, analogsignal_id=0, stim_times_channel=None, min_rel_time=None, max_rel_time=None)¶

A class for reading smr-files and accessing stimulus times and voltage traces.

See also

spike_analysis.core.ReaderLabView

Parameters:¶

• path (str) – The path to the smr-file.

• analogsignal_id (int) – The ID of the analog signal to read.

• stim_times_channel (str) – The name of the channel containing the stimulus times.

• min_rel_time (float) – The minimum relative time to include in the voltage traces.

• max_rel_time (float) – The maximum relative time to include in the voltage traces.

Attributes:¶

path¶

The path to the smr-file.

Type:¶

str

analogsignal_id¶

The ID of the analog signal to read.

Type:¶

int

stim_times_channel¶

The name of the channel containing the stimulus times.

Type:¶

str

min_rel_time¶

The minimum relative time to include in the voltage traces.

Type:¶

float

max_rel_time¶

The maximum relative time to include in the voltage traces.

Type:¶

float

t¶

The time points of the voltage traces.

Type:¶

numpy.ndarray

v¶

The voltage values of the traces.

Type:¶

numpy.ndarray

stim_times¶

The times of the stimuli.

Type:¶

list

t_start¶

The start time of the voltage traces.

Type:¶

float

t_end¶

The end time of the voltage traces.

Type:¶

float

Methods:¶

get_voltage_traces()	Get the time points and voltage values of the traces.
get_stim_times()	Get the times of the stimuli.
get_serialize_dict()	Get a dictionary containing the attributes of the ReaderSmr object.