read_cell_number_file¶

singlecell_input_mapper.reader.read_cell_number_file(cell_nr_fn)¶

Load the cell number file.

The cell number file must have the following format:

Anatomical_area (optional)  Presynaptic_cell_type   n_cells
A1                              cell_type_1                 8
A1                              cell_type_2                 14
...

Parameters:¶

cellNumberFileName : str

Path to the cell number file.

Returns:¶

Dictionary of the form {celltype: {column: nr_of_cells}}

Return type:¶

dict

Example

>>> load_cell_number_file(
...    'getting_started/example_data/anatomical_constraints/'
...    'example_embedding_86_C2_center/'
...    'NumberOfConnectedCells.csv'
...    )
{
    'L4py': {
        'A1': 8,
        'A2': 1,
        'A3': 7,
        'A4': 3,
        'Alpha': 9,
        'B1': 72,
        'B2': 30,
        'B3': 97,
        'B4': 30,
        'Beta': 0,
        'C1': 59,
        'C2': 374,
        'C3': 88,
        'C4': 3,
        'D1': 22,
        'D2': 89,
        'D3': 59,
        'D4': 0,
        'Delta': 0,
        'E1': 0,
        'E2': 0,
        'E3': 0,
        'E4': 0,
        'Gamma': 16},
        'L6cc': {...},
        ...