visualize ❭ dendrogram ❭ DendrogramStatistics

DendrogramStatistics¶

class visualize.dendrogram.DendrogramStatistics(cell)¶

Plot dendrogram statistics.

This class creates a composite plot of a dendrogram, as well as dendritic length and synapse count statistics. These statistics include:

• The total amount of dendritic length in a certain bin of soma distance.

• The total amount of synapses in a certain bin of soma distance.

• The total amount of synapses per micron dendritic length.

Example:

>>> d = DendrogramStatistics(cell)
>>> fig = d.plot()
>>> plt.show()

Parameters:¶

cell (Cell) – The cell object.

Attributes:¶

dendrogram¶

The dendrogram object.

Type:¶

Dendrogram

dend_statistics¶

The dendrite statistics object.

Type:¶

_DendrogramDendriteStatistics

syn_statistics¶

The synapse statistics object.

Type:¶

_DendrogramSynapseStatistics

Methods:¶

plot(figsize, colormap_synapses)

Plot the dendrogram statistics.