visualize ❭ dendrogram ❭ _DendrogramSection

_DendrogramSection¶

class visualize.dendrogram._DendrogramSection(name, x_dist_start, x_dist_end, sec, main_bifurcation=False, sec_id=None)¶

A class to represent a dendrogram section.

A dendrogram section is a single neuron section, as it is represented in a dendrogram. It does not necessarily contain any morphological information. The usecase of this class is to be a leightweight dataclass, used in the Dendrogram and DendrogramStatistics classes.

Parameters:¶

• name (str) – The name of the section.

• x_dist_start (float) – The starting distance of the section in \(\mu m\).

• x_dist_end (float) – The ending distance of the section in \(\mu m\).

• sec (PySection) – The neuron section.

• main_bifurcation (bool) – Whether the section is the main bifurcation. Default is False.

• sec_id (int) – The section id of the section.

Attributes:¶

name¶

The name of the section.

Type:¶

str

x_dist_start¶

The starting distance of the section in \(\mu m\).

Type:¶

float

x_dist_end¶

The ending distance of the section in \(\mu m\).

Type:¶

float

sec¶

The neuron section.

Type:¶

PySection

synapses¶

A dictionary of synapses in the section.

Type:¶

dict

main_bifurcation¶

Whether the section is the main bifurcation. Default is False.

Type:¶

bool

sec_id¶

The section id of the section.

Type:¶

int

Methods:¶

_add_synapse(label, x)

Add a synapse to a dendrogram section.