biophysics_fitting ❭ setup_stim

setup_stim

This module provides methods to set up stimuli by adding recording/injection pipettes to Cell objects.

Stimulus types included in this module are:

  • Step current injection at the soma

  • EPSP injection on an “ApicalDendrite” section at a given distance from the soma

  • The stimuli used by Hay et al. [2]:

    • a bAP (backpropagating AP) stimulus.

    • a BAC (bAP-Activated \(Ca^{2+}\)) stimulus.

    • Three step current stimuli with amplitudes \([0.619, 0.793, 1.507]\ nA\).

Functions

setup_soma_step(cell, amplitude, delay, duration, dist)

Setup up a step current at the soma, or a given dist from the soma.

setup_apical_epsp_injection(cell, dist, amplitude, delay, rise, decay)

Setup an EPSP injection at a given distance from the soma.

setup_bAP(cell, delay)

Setup a bAP (backpropagating action potential) stimulus for the cell.

setup_BAC(cell, dist, delay)

Setup a BAC (bAP-activated Ca2+-spike) stimulus for the cell.

setup_StepOne(cell, delay)

Setup a step current stimulus at the soma:

setup_StepTwo(cell, delay)

Setup a step current stimulus at the soma:

setup_StepThree(cell, delay)

Setup a step current stimulus at the soma: