❭ API reference ❭ biophysics_fitting ❭

simulator

This module concerns itself with setting up a cell with biophysical details and simulation parameters.

The Simulator_Setup class is an inherent attribute of the Simulator class, and should only be accessed as such. It takes care of equipping a cell with biophysical details, using convenient pd.Series objects as parameter vectors.

The class Simulator is used to transform a parameter vector into simulated voltage traces. It allows to apply a variety of stimuli to the cell and extract voltage traces.

The results of this module can be used in conjunction with evaluator to iteratively run and evaluate simulations.

Classes

Simulator_Setup

Class for setting up cells with biophysical details.

Simulator

This class can be used to transform a parameter vector into simulated voltage traces.

Functions

run_fun(cell, T, Vinit, dt, recordingSites, tStart, tStop, vardt, silent)

Default function to run a simulation.