biophysics_fittingL5tt_parameter_setup

L5tt_parameter_setup

This module provides method to set up the parameters for a Layer 5 Pyramidal Tract neuron (L5PT/L5tt)

These parameters and templates are used to set up the biophysical constraints for the L5PT cell in e.g. simulator.

Functions

hay_param_to_scp_neuron_param(p)

Convert a Hay parameter name to a SCP neuron parameter name.

hay_params_to_scp_neuron_params(params)

Convert a list of Hay parameter names to a list of SCP neuron parameter names.

get_L5tt_template()

Get a template cell parameter dictionary for a L5PT cell.

get_L5tt_template_v2()

Get a template cell parameter dictionary for a L5PT cell.

set_morphology(cell_param, filename)

Add the morphology to a cell parameter object.

check_unset_range_mechanisms(cell_param)

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set_ephys(cell_param, params)

Updates cell_param file.

set_param(cell_param, params)

Updates cell_param given a dict of params in the dot naming convention.

set_many_param(cell_param, params)

Updates cell_param given a dict of params in the dot naming convention.

set_hot_zone(cell_param, min_, max_, outsidescale_sections)

Insert Ca_LVAst and Ca_HVA channels along the apical dendrite between min_ and max_ distance from the soma.