_evoked_activity¶

simrun.generate_synapse_activations._evoked_activity(cellParamName, evokedUpParamName, dirPrefix='', seed=None, nSweeps=1000, tStop=345)¶

Calculate and write synapse activations and presynaptic spike times.

This function calculates the synapse activations and presynaptic spike times for a single cell.

Synapse activation files are generated with single_cell_parser.analyze.compute_synapse_distances_times(). Spike time files are generated with single_cell_parser.analyze.write_presynaptic_spike_times().

Parameters:¶

cellParamName : str¶

Path to a Cell parameters file, containing information about the neuron morphology (link to a .hoc file) and biophysical properties.

evokedUpParamName : str¶

Path to Network parameters file, containing information on synapse and network parameters per cell type.

dirPrefix : str¶

Prefix for the directory where the results are stored.

seed : int¶

Seed for the random number generator.

nSweeps : int¶

Amount of times to run the simulation with the same parameter configuration.

tStop : float¶

Time in ms at which the simulation should stop.

Returns:¶

List of paths to the synapse activation files.

Return type:¶

list