simrun ❭ generate_synapse_activations ❭ _evoked_activity

_evoked_activity

simrun.generate_synapse_activations._evoked_activity(cellParamName, evokedUpParamName, dirPrefix='', seed=None, nSweeps=1000, tStop=345)

Calculate and write synapse activations and presynaptic spike times.

This function calculates the synapse activations and presynaptic spike times for a single cell.

Synapse activation files are generated with single_cell_parser.analyze.compute_synapse_distances_times(). Spike time files are generated with single_cell_parser.analyze.write_presynaptic_spike_times().

Parameters:

  • cellParamName (str) – Path to a Cell parameters file, containing information about the neuron morphology (link to a .hoc file) and biophysical properties.

  • evokedUpParamName (str) – Path to Network parameters file, containing information on synapse and network parameters per cell type.

  • dirPrefix (str) – Prefix for the directory where the results are stored.

  • seed (int) – Seed for the random number generator.

  • nSweeps (int) – Amount of times to run the simulation with the same parameter configuration.

  • tStop (float) – Time in ms at which the simulation should stop.

Returns:

List of paths to the synapse activation files.

Return type:

list