biophysics_fitting
❭ simulator
❭ run_fun
run_fun¶
-
biophysics_fitting.simulator.run_fun(cell, T=
34.0
, Vinit=-75.0
, dt=0.025
, recordingSites=[]
, tStart=0.0
, tStop=250.0
, vardt=True
, silent=True
)¶ Default function to run a simulation.
- Parameters:¶
cell – The cell object.
T (float) – The temperature (Celsius).
Vinit (float) – The initial voltage (mV).
dt (float) – The time step (ms).
recordingSites ([float]) – The recording sites (um).
tStart (float) – The start time of the simulation (ms).
tStop (float) – The stop time of the simulation (ms).
vardt (bool) – Whether to use variable time step.
silent (bool) – Whether to suppress output.
- Returns:¶
The cell object, containing simulation data.
- Return type:¶