biophysics_fittingsimulatorrun_fun

run_fun

biophysics_fitting.simulator.run_fun(cell, T=34.0, Vinit=-75.0, dt=0.025, recordingSites=[], tStart=0.0, tStop=250.0, vardt=True, silent=True)

Default function to run a simulation.

Parameters:
  • cell – The cell object.

  • T (float) – The temperature (Celsius).

  • Vinit (float) – The initial voltage (mV).

  • dt (float) – The time step (ms).

  • recordingSites ([float]) – The recording sites (um).

  • tStart (float) – The start time of the simulation (ms).

  • tStop (float) – The stop time of the simulation (ms).

  • vardt (bool) – Whether to use variable time step.

  • silent (bool) – Whether to suppress output.

Returns:

The cell object, containing simulation data.

Return type:

Cell