single_cell_parser ❭ init_neuron_run

init_neuron_run

single_cell_parser.init_neuron_run(simparam, vardt=False, *events)

Default NEURON run with inital parameters according to parameter file.

Used in run_new_simulations to set up and run a simulation.

Parameters:

  • simparam (dict | dict-like) – A dictionary containing the simulation parameters. Must include the keys ‘dt’, ‘tStop’, ‘Vinit’, ‘T’.

  • vardt (bool) – Whether or not to use variable time step integration.

  • events (callable, optional) – Optional parameters: callable “events” that are passed to Event objects holding a FInitializeHandler. This can be used to implement changes of parameters during the course of the simulation using h.cvode.event(t, "statement") in the supplied callable, where “statement” is another Python callable which may be used to change parameters.

Returns:

None. Runs the NEURON simulation.