reader¶
Read and parse .hoc, .syn, .con, and .am files.
Deprecated since version This: module additionally provides readers for Synapse activation and Presynaptic spike times files.
However, as these formats are now dataframes, they are saved with a pandas or dask dumpers in databases.
They can still be explicitly read using Python’s open()
and read()
capabilities, but this is not recommended, or efficient.
- See also:
data_base.IO.LoaderDumper
for dask and pandas related IO.
Functions¶
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Reads a hoc file and returns a list of Edge objects. |
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Read AMIRA scalar fields. |
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Read a .syn file and returns a dictionary of synapse locations. |
Read in a .syn and returns a dictionary of synapse locations and whether they are pruned or not. |
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Read in a .con file and return a dictionary of functional connections. |
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Reads list of all functional synapses and their activation times. |
Reads list of all functional synapses and their activation times. |
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Reads all trials and spike times within these trials. |
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Reads list of all anatomical synapses and their maximum conductance values. |
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Read an AMIRA landmark file |