❭ API reference ❭ single_cell_parser ❭

reader

Read and parse .hoc, .syn, .con, and .am files.

See also

data_base.IO.LoaderDumper for dask and pandas related IO.

Functions

read_hoc_file(fname)

Reads a hoc file and returns a list of Edge objects.

read_scalar_field(fname, dtype)

Read ASCII AMIRA scalar field mesh files with high speed.

read_synapse_realization(fname)

Read a .syn file and returns a dictionary of synapse locations.

read_pruned_synapse_realization(fname)

Read in a .syn and returns a dictionary of synapse locations and whether they are pruned or not.

read_functional_realization_map(fname)

Read in a .con file and return a dictionary of functional connections.

read_synapse_activation_file(fname)

Reads list of all functional synapses and their activation times.

read_complete_synapse_activation_file(fname)

Reads list of all functional synapses and their activation times.

read_spike_times_file(fname)

Reads all trials and spike times within these trials.

read_synapse_weight_file(fname)

Reads list of all anatomical synapses and their maximum conductance values.

read_landmark_file(landmarkFilename)

Read an AMIRA landmark file