writer¶

Write out anatomical, morphology or simulation data.

Functions¶

`write_landmark_file`(fname, landmarkList)	Write an AMIRA landmark file from 3D coordinates
`write_sim_results`(fname, t, v)	Write out a voltage trace file.
`write_all_traces`(fname, t, vTraces)	Write out a list of voltage traces.
`write_cell_synapse_locations`(fname, synapses, cellID)	Write a .syn file.
`write_pruned_synapse_locations`(fname, synapses, cellID)	Write a .syn file with a pruned flag.
`write_functional_realization_map`(fname, functionalMap, anatomicalID)	Write out a .con file.
`write_synapse_activation_file`(fname, cell, synTypes, synDistances, synTimes, activeSyns)	Write out a Synapse activation file.
`write_synapse_weight_file`(fname, cell)	Write out a synapse weight file.
`write_PSTH`(fname, PSTH, bins)	Write PSTH and time bins of PSTH,
`write_spike_times_file`(fname, spikeTimes)	Write trial numbers and all spike times in each trial (may be empty).
`write_presynaptic_spike_times`(fname, cells)	Write cell type, presynaptic cell ID and spike times of all connected
`write_cell_simulation`(fname, cell, traces, tVec, allPoints, step_frames, selected_index)	Write Amira SpatialGraph files corresponding to time steps of entire simulation run.
`write_functional_map`(fname, functionalMap)	Write a functional map to an AMIRA file.
`generate_landmark_template`(landmark_name, c, vertexviewid, len)	Generate a template for a landmark file in Amira.
`write_landmarks_colorcoded_to_folder`(basedir, landmarks, values, vmin, vmax, vbinsize)	Write landmarks to a folder, colorcoded by their values.
`value_to_color`(v, vmin, vmax)	Map a value to a color.