❭ API reference ❭ singlecell_input_mapper ❭ udvary2022 ❭

synapse_mapper

This module allows to compute synapse density fields from a Post-Synaptic Target (PST) density field and assign synapses to a neuron morphology based on this synapse density field. The NetworkMapper class uses these classes to create synapse realizations. While the classes in this module can be used in isolation, there are also full pipelines available that use the classes here to map synapses to a neuron morphology. Consult the module map_singlecell_inputs for such a pipeline, or the documentation of NetworkMapper for more info on how to use these classes in a pipeline.

Classes

SynapseMapper

Assign synapses to neuron morphology from density meshes.

SynapseDensity

Compute synapse density mesh from a PST density mesh.

Attributes

logger

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