❭ API reference ❭ singlecell_input_mapper ❭ udvary2022 ❭

writer

Write out the results of a single connectivity realization or a population of realizations.

Functions

write_landmark_file(fname, landmarkList)

Write Amira landmark file

write_cell_synapse_locations(fname, synapses, cellID)

Write a .syn file, containing all synapses and their corresponding cellID, sectionID and x.

write_anatomical_realization_map(fname, functionalMap, anatomicalID)

Writes a .con file containing a list of all functional connections.

write_sample_connectivity_summary(fname, cellTypeSummaryData, columnSummaryData)

Write a summary of a single connectivity realization to a file.

write_population_connectivity_summary(fname, populationDistribution)

Write a summary of populations of connectivity realizations to a file.

write_population_and_sample_connectivity_summary(fname, populationDistribution, cellTypeSummaryData, columnSummaryData)

…(docstring unchanged)

write_scalar_field(fname, scalarField)

Write a scalar field to an AmiraMesh file.

Attributes

logger

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OUT_CELL_TYPES

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