biophysics_fitting ❭ optimizer ❭ eaAlphaMuPlusLambdaCheckpoint

eaAlphaMuPlusLambdaCheckpoint¶

biophysics_fitting.optimizer.eaAlphaMuPlusLambdaCheckpoint(population, toolbox, mu, cxpb, mutpb, ngen, stats=None, halloffame=None, cp_frequency=1, db_run=None, continue_cp=False, db=None)¶

This is the \((~\alpha,\mu~,~\lambda)\) evolutionary algorithm

Parameters:¶

• population (list) – list of deap Individuals

• toolbox (deap Toolbox)

• mu (int) – Total parent population size of EA

• cxpb (float) – Crossover probability

• mutpb (float) – Mutation probability

• ngen (int) – Total number of generation to run

• stats (deap.tools.Statistics) – generation of statistics

• halloffame (deap.tools.HallOfFame) – hall of fame

• cp_frequency (int) – generations between checkpoints

• cp_filename (DataBase or None) – db_run, where the checkpoint is stored in [generation]_checkpoint. Was: path to checkpoint filename

• continue_cp (bool) – whether to continue