biophysics_fitting ❭ optimizer ❭ run

run¶

biophysics_fitting.optimizer.run(self, max_ngen=10, offspring_size=None, continue_cp=False, cp_filename=None, cp_frequency=1, pop=None, db=None)¶

This method is a class method of the BluePyOpt optimisations.DEAPOptimisation class. It is extended here such that a start population can be defined. Running actual optimization is done with the start_run(), which further extends this method.

Note

the population needs to be in a special format. Use methods in biophysics_fitting.population to create a population.