single_cell_parser ❭ writer ❭ write_functional_realization_map

write_functional_realization_map¶

single_cell_parser.writer.write_functional_realization_map(fname=None, functionalMap=None, anatomicalID=None)¶

Write out a .con file.

Writes list of all functional connections coded by tuples (cell type, presynaptic cell index, synapse index). Only valid for anatomical synapse realization given by anatomicalID

See also:

• .con for more information on the .con file format.

• single_cell_parser.reader.read_functional_realization_map() for the corresponding reader function.

Parameters:¶

• fname (str) – The name of the file to write to.

• functionalMap (list) – A list of tuples, each containing a cell type, a presynaptic cell ID, and a synapse ID.

• anatomicalID (str) – The ID of the anatomical synapse realization.

Example

>>> functionalMap = [('cell\_type\_1', 0, 0), ('cell\_type\_2', 0, 1)]
>>> write\_functional\_realization\_map('functional\_realization.con', functionalMap, 'syn\_file.syn')