single_cell_parser ❭ cell ❭ Cell ❭ get_range_var_conductances

Cell.get_range_var_conductances¶

single_cell_parser.cell.Cell.get_range_var_conductances(density=True)¶

Get the conductances of each section, categorized by range variable and segment.

This method computes the conductance of each range variable in each segment, and categorizes them by: section, segment, range variable.

Parameters:¶

density (bool, optional) – If True (default), the conductance is returned in units of conductance density: \(S / cm ^2\). If False, the total amount of conductivity is returned for each segment i.e. the conductance density multiplied by the area of the segment.

Returns:¶

A nested list/dictionary structure. Each element contains all range variables and segments for one section. Each such element is a dictionary, where the keys are range variables. Each such key is then a list, containing the value of this range variable for each segment.

Return type:¶

List[List[Dict[List]]]

Example

>>> cell.get_range_var_conductances()
[
    {               # section 0
        'Ca_LVAst': [
            0.0017, # segment 0
            0.0017, # segment 1
            0.0017, # segment 2
            0.0017, # segment 3
            0.0017  # segment 4
        ],
        'Ca_HVA': [0.0017, 0.0017, 0.0017, 0.0017, 0.0017],
        ...
    },
    {...},          # section 1
    {...},          # section 2
]