single_cell_parser ❭ cell ❭ Cell ❭ get_synapse_activation_dataframe

Cell.get_synapse_activation_dataframe

single_cell_parser.cell.Cell.get_synapse_activation_dataframe(max_spikes=20, sim_trial_index=0)

Get a Synapse activation dataframe.

The Synapse activation dataframe contains:

  • Synapse ID

  • Synapse type (i.e. presynaptic origin)

  • Synapse location: soma distance, section ID, section point ID, and dendrite label of the synapse

  • Activation times

  • The simulation trial index

Parameters:

  • max_spikes (int, optional) – The maximum number of spikes (i.e. synaptic activations, not necessarily the same as spikes of the presynaptic cell) to write out. Defaults to 20.

  • sim_trial_index (int, optional) – The index of the simulation trial. Defaults to 0.

Returns:

The synapse activation dataframe.

Return type:

pandas.DataFrame