Cell¶

class singlecell_input_mapper.udvary2022.cell.Cell¶

Bases: object

Cell object for mapping synapses onto a morphology.

This is a leightweight dataclass specialized for use with singlecell_input_mapper.singlecell_input_mapper.synapse_mapper.

See also

This is not the same class as single_cell_parser.cell.Cell. Contrary to single_cell_parser.cell.Cell, this class does not provide any biophysical details, simulation parameters or biophysical details.

Attributes:¶

id¶

Unique identifier for the cell.

Type:¶

str

soma¶

The soma section.

Type:¶

PySection2

structures¶

Dictionary mapping section labels (e.g. “Soma”, “Dendrite” …) to a list of corresponding sections.

Type:¶

dict

sections¶

List of all sections.

Type:¶

list

boundingBox¶

Bounding box around the cell.

Type:¶

tuple

synapses¶

Dictionary mapping presynaptic cell types to a list of Synapse objects.

Type:¶

dict

Methods:¶

distance_to_soma(sec, x)	Calculate the path length to soma from location x on section sec
get_bounding_box()	Calculate the bounding box around the cell.
add_synapse(secID, ptID, ptx, preType, postType)	Add a Synapse to the cell.
remove_synapses(preType)	Remove all synapses of type preType from the cell.