Synapse¶

class singlecell_input_mapper.udvary2022.cell.Synapse(edgeID, edgePtID, edgex, preCellType='', postCellType='')¶

Bases: object

Leightweight dataclass to store basic synapse information.

Synapses are direct attributes of PySection2 objects, which in turn are direct attributes of Cell objects. Contains information on: pre- and postsynaptic cell type, branch ID of postsynaptic cell, branch pt ID, and xyz-coordinates of synapse location

See also

This is not the same class as single_cell_parser.synapse.Synapse. This is a leightweight dataclass specialized for use with single_cell_input_mapper.synapse_mapper, and does not contain any methods for NEURON API or synapse activations during simulations.

Parameters:¶

edgeID : ind¶

Section ID.

edgePtID : int¶

Point ID on that section.

edgex : float¶

Relative position along the section (0-1).

preCellType : str¶

Presynaptic cell type. Default: ‘’.

postCellType : str¶

Postsynaptic cell type. Default: ‘’.

Attributes:¶

secID¶

Section ID.

Type:¶

int

ptID¶

Point ID on that section.

Type:¶

int

x¶

Relative position along the section (0-1).

Type:¶

float

preCellType¶

Presynaptic cell type.

Type:¶

str

preCell¶

Presynaptic cell.

Type:¶

PointCell

postCellType¶

Postsynaptic cell type.

Type:¶

str

coordinates¶

3D coordinates of the synapse location.

Type:¶

numpy.ndarray