CellParser¶

class singlecell_input_mapper.udvary2022.cell.CellParser(morph_fn='')¶

Bases: object

Extract cell morphology from an AMIRA hoc file.

See also

This is not the same class as single_cell_parser.cell_parser.CellParser. This is a leightweight dataclass specialized for use with single_cell_parser.synapse_mapper.SynapseMapper, and does not contain any biophysical details.

Parameters:¶

hocFilename : str

File name of the hoc file. Default: ‘’.

Attributes:¶

hoc_fname¶

File name of the hoc file.

Type:¶

str

cell¶

Cell object.

Type:¶

Cell

Methods:¶

spatialgraph_to_cell()	Set up a cell object from an AMIRA hoc file.
get_cell()	Returns cell if it is set up